Added option to use satellite data in NBS
This commit is contained in:
parent
92a8e0d68f
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@ -269,44 +269,68 @@ namespace FarmmapsApi.Services
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return shadowItem;
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}
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public async Task<Item> RunSatelliteTask(Item cropfieldItem)
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{
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var taskmapRequest = new TaskRequest { TaskType = SATELLITE_TASK };
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public async Task<string> RunSatelliteTask(Item cropfieldItem)
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{
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_logger.LogInformation("Gathering satellite information for cropfield, this might take a while!");
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var taskmapRequest = new TaskRequest { TaskType = SATELLITE_TASK };
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string itemTaskCode = await _farmmapsApiService.QueueTaskAsync(cropfieldItem.Code, taskmapRequest);
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await PollTask(TimeSpan.FromSeconds(5), async (tokenSource) =>
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{
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var itemTaskStatus = await _farmmapsApiService.GetTaskStatusAsync(cropfieldItem.Code, itemTaskCode);
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_logger.LogInformation($"Waiting on collection satellite data; status: {itemTaskStatus.State}");
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_logger.LogInformation($"Waiting on satellite data; status: {itemTaskStatus.State}");
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if (itemTaskStatus.IsFinished)
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tokenSource.Cancel();
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});
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var itemTask = await _farmmapsApiService.GetTaskStatusAsync(cropfieldItem.Code, itemTaskCode);
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if (itemTask.State == ItemTaskState.Error)
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{
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_logger.LogError($"Something went wrong with task execution: {itemTask.Message}");
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return null;
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_logger.LogError($"Something went wrong when trying to process satellite data; {itemTask.Message}");
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}
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//the satellite item is a child of the cropfield
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var itemName = "satellite";
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var satelliteItem = await FindChildItemAsync(cropfieldItem.Code,
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TEMPORAL_ITEMTYPE, itemName);
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if (satelliteItem == null)
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return itemTask.Code;
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}
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public async Task<Item> FindSatelliteItems(Item cropfieldItem, string satelliteTaskCode)
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{
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var taskStatus = await _farmmapsApiService.GetTaskStatusAsync(cropfieldItem.Code, satelliteTaskCode);
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// find ndvi or wdvi satellite data geotiffs
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var temporalItem = await FindChildItemAsync(cropfieldItem.Code, TEMPORAL_ITEMTYPE,
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"Cropfield Satellite items", item => item.SourceTask == SATELLITE_TASK &&
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taskStatus.Finished >= item.Created &&
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taskStatus.Finished <= item.Created.Value.AddHours(1));
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if (temporalItem == null)
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{
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_logger.LogError("Could not find the satellite data as a child item under the cropfield");
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return null;
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_logger.LogError("Temporal item not found");
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}
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var satelliteTiffs = await _farmmapsApiService.GetItemChildrenAsync(temporalItem.Code);
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var firstSatelliteItem = satelliteTiffs.FirstOrDefault();
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// geotiffs can be found as a item of children under the satellite item
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var allSatelliteItems = await _farmmapsApiService.GetItemChildrenAsync(satelliteItem.Code);
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if (firstSatelliteItem == null)
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{
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_logger.LogError("Satellite item not found");
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}
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var lastSatItem = allSatelliteItems[^1];
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return firstSatelliteItem;
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return lastSatItem;
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}
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@ -13,5 +13,8 @@ namespace FarmmapsNbs.Models
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public string PotatoPurposeType { get; set; }
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public int TargetYield { get; set; }
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public JObject GeometryJson { get; set; }
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public string InputLayerName { get; set; }
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}
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}
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8
FarmmapsNbs/Models/Settings.cs
Normal file
8
FarmmapsNbs/Models/Settings.cs
Normal file
@ -0,0 +1,8 @@
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namespace FarmmapsNbs.Models
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{
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public class Settings
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{
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public string CropfieldItemCode { get; set; }
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public string SatelliteTaskCode { get; set; }
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}
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}
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@ -9,6 +9,7 @@ using FarmmapsApi.Services;
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using FarmmapsNbs.Models;
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using Microsoft.Extensions.Logging;
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using Newtonsoft.Json;
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using Newtonsoft.Json.Linq;
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using static FarmmapsApiSamples.Constants;
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namespace FarmmapsNbs
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@ -16,12 +17,15 @@ namespace FarmmapsNbs
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public class NbsApplication : IApplication
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{
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private const string DownloadFolder = "Downloads";
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private const string SettingsFile = "settings.json";
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private readonly ILogger<NbsApplication> _logger;
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private readonly FarmmapsApiService _farmmapsApiService;
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private readonly NitrogenService _nitrogenService;
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private readonly GeneralService _generalService;
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private Settings _settings;
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public NbsApplication(ILogger<NbsApplication> logger, FarmmapsApiService farmmapsApiService,
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GeneralService generalService, NitrogenService nitrogenService)
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{
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@ -40,6 +44,10 @@ namespace FarmmapsNbs
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if (!Directory.Exists(DownloadFolder))
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Directory.CreateDirectory(DownloadFolder);
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LoadSettings();
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// !! this call is needed the first time an api is called with a fresh clientid and secret !!
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await _farmmapsApiService.GetCurrentUserCodeAsync();
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var roots = await _farmmapsApiService.GetCurrentUserRootsAsync();
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@ -59,6 +67,8 @@ namespace FarmmapsNbs
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private async Task Process(List<UserRoot> roots, NitrogenInput input)
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{
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// specify if you are using an already created cropfield:
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bool useCreatedCropfield = false;
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var plantingDate = input.PlantingDate;
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var measurementDate = input.MeasurementDate;
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@ -75,24 +85,79 @@ namespace FarmmapsNbs
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_logger.LogError("Could not find a needed root item");
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return;
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}
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var cropfieldItem = await _generalService.CreateCropfieldItemAsync(myDriveRoot.Code,
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$"VRA NBS cropfield {input.OutputFileName}", plantingDate.Year, input.GeometryJson.ToString(Formatting.None));
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// Use already created cropfield or create new one
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Item cropfieldItem;
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if (useCreatedCropfield == false || string.IsNullOrEmpty(_settings.CropfieldItemCode))
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{
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_logger.LogInformation("Creating cropfield");
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cropfieldItem = await _generalService.CreateCropfieldItemAsync(myDriveRoot.Code,
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$"VRA NBS cropfield {input.OutputFileName}", plantingDate.Year, input.GeometryJson.ToString(Formatting.None));
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_settings.CropfieldItemCode = cropfieldItem.Code;
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SaveSettings();
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}
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else
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{
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_logger.LogInformation("Cropfield already exists, trying to get it");
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cropfieldItem = await _farmmapsApiService.GetItemAsync(_settings.CropfieldItemCode);
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}
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var geotiffItem = (Item)null;
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if (input.File.Contains(".tif") || input.File.Contains(".geotiff")) {
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_logger.LogInformation("input = tiff data");
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var dataPath = Path.Combine("Data", input.File);
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geotiffItem = await _generalService.UploadDataAsync(uploadedRoot, GEOTIFF_PROCESSED_ITEMTYPE, dataPath,
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Path.GetFileNameWithoutExtension(input.File));
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// No file input, use most recent satellite image
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if (string.IsNullOrEmpty(input.File))
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{
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_logger.LogInformation("No specific data given, retrieving most recent satellite image");
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if (geotiffItem == null) {
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_logger.LogError("Could not find item for uploaded data");
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return;
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}
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// check if satellite task not yet done, do here and save taskcode
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if (useCreatedCropfield == false || string.IsNullOrEmpty(_settings.SatelliteTaskCode))
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{
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var satelliteTaskCode = await _generalService.RunSatelliteTask(cropfieldItem);
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_settings.SatelliteTaskCode = satelliteTaskCode;
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SaveSettings();
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}
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// Find most recent satellite item
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Item recentSatalliteItem = await _generalService.FindSatelliteItems(cropfieldItem, _settings.SatelliteTaskCode);
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// must be ndvi[0] or wdvi[1]
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var inputType = (recentSatalliteItem.Data["layers"] as JArray)?[1]["name"].ToString();
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if (string.IsNullOrEmpty(inputType))
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{
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_logger.LogError("Could not get the input type name from the satellite item");
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return;
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}
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// download the geotiff
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_logger.LogInformation("Downloading geotiff file");
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await _farmmapsApiService.DownloadItemAsync(recentSatalliteItem.Code,
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Path.Combine(DownloadFolder, $"nbs_inputSatelliteGeotiff_{input.OutputFileName}.zip"));
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geotiffItem = recentSatalliteItem;
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}
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// (geo)tiff input:
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else if (input.File.Contains(".tif") || input.File.Contains(".geotiff")) {
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_logger.LogInformation("input = tiff data");
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var dataPath = Path.Combine("Data", input.File);
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geotiffItem = await _generalService.UploadDataAsync(uploadedRoot, GEOTIFF_PROCESSED_ITEMTYPE, dataPath,
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Path.GetFileNameWithoutExtension(input.File));
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if (geotiffItem == null) {
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_logger.LogError("Could not find item for uploaded data");
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return;
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}
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}
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// json/shape input
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else {
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var isGeoJson = input.File.Contains("json");
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var dataPath = Path.Combine("Data", input.File);
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@ -117,6 +182,12 @@ namespace FarmmapsNbs
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Path.Combine(DownloadFolder, $"{input.OutputFileName}.input_geotiff.zip"));
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}
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_logger.LogInformation($"Calculating targetN with targetYield: {input.TargetYield}");
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var targetNItem = await _nitrogenService.CreateTargetNItem(cropfieldItem);
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var targetNData = await _nitrogenService.CalculateTargetN(cropfieldItem, targetNItem, plantingDate,
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@ -139,7 +210,7 @@ namespace FarmmapsNbs
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_logger.LogInformation("Calculating uptake map");
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var uptakeMapItem =
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await _nitrogenService.CalculateUptakeMap(cropfieldItem, geotiffItem, plantingDate,
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measurementDate, input.InputVariable);
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measurementDate, input.InputVariable, input.InputLayerName);
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if (uptakeMapItem == null)
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{
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_logger.LogError("Something went wrong with creating the uptakeMap");
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@ -189,5 +260,28 @@ namespace FarmmapsNbs
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}
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// Functions to save previously created cropfields
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private void LoadSettings()
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{
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if (File.Exists(SettingsFile))
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{
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var jsonText = File.ReadAllText(SettingsFile);
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_settings = JsonConvert.DeserializeObject<Settings>(jsonText);
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}
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else
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{
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_settings = new Settings();
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}
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}
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private void SaveSettings()
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{
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if (_settings == null)
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return;
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var json = JsonConvert.SerializeObject(_settings);
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File.WriteAllText(SettingsFile, json);
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}
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}
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}
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@ -1,126 +1,182 @@
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[
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{
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"file": "Scan_1_20190605.json",
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"inputVariable": "irmi",
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"outputFileName": "vranbs1",
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"plantingDate": "2019-04-18",
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"measurementDate": "2019-06-05",
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"potatoPurposeType": "consumption",
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"targetYield": 45,
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"geometryJson": { "type": "Polygon", "coordinates": [ [ [ 3.40843828875524, 50.638966444680605 ], [ 3.408953272886064, 50.639197789621612 ], [ 3.409242951459603, 50.639469958681836 ], [ 3.409328782148028, 50.639612846807708 ], [ 3.409457528180712, 50.639789755314411 ], [ 3.409639918393741, 50.640014292074966 ], [ 3.409833037442765, 50.640211611372706 ], [ 3.410069071836049, 50.640395321698435 ], [ 3.410380208081761, 50.640572227259661 ], [ 3.410605513638958, 50.640715112034222 ], [ 3.411925160474145, 50.641177783561204 ], [ 3.411935889310142, 50.640728720085136 ], [ 3.412590348309737, 50.63948356709389 ], [ 3.413244807309242, 50.638224772339846 ], [ 3.413400375432099, 50.637901562841307 ], [ 3.413539850300779, 50.637449065809889 ], [ 3.413475477284437, 50.637418445552932 ], [ 3.40999396998362, 50.637449065810451 ], [ 3.409940325803365, 50.638102293212661 ], [ 3.409575545377398, 50.638483338338325 ], [ 3.409060561246574, 50.638707881340494 ], [ 3.40843828875524, 50.638966444680605 ] ] ] }
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},
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{
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"file": "Scan_1_20190605.zip",
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"inputVariable": "irmi",
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"outputFileName": "vranbs2",
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"plantingDate": "2019-04-18",
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"measurementDate": "2019-06-05",
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"potatoPurposeType": "starch",
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"targetYield": 45,
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"geometryJson": {
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"type": "Polygon",
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"coordinates": [
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[
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[ 3.40843828875524, 50.638966444680605 ],
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[ 3.408953272886064, 50.639197789621612 ],
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[ 3.409242951459603, 50.639469958681836 ],
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[ 3.409328782148028, 50.639612846807708 ],
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[ 3.409457528180712, 50.639789755314411 ],
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[ 3.409639918393741, 50.640014292074966 ],
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[ 3.409833037442765, 50.640211611372706 ],
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[ 3.410069071836049, 50.640395321698435 ],
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[ 3.410380208081761, 50.640572227259661 ],
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[ 3.410605513638958, 50.640715112034222 ],
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[ 3.411925160474145, 50.641177783561204 ],
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[ 3.411935889310142, 50.640728720085136 ],
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[ 3.412590348309737, 50.63948356709389 ],
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[ 3.413244807309242, 50.638224772339846 ],
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[ 3.413400375432099, 50.637901562841307 ],
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[ 3.413539850300779, 50.637449065809889 ],
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[ 3.413475477284437, 50.637418445552932 ],
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[ 3.40999396998362, 50.637449065810451 ],
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[ 3.409940325803365, 50.638102293212661 ],
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[ 3.409575545377398, 50.638483338338325 ],
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[ 3.409060561246574, 50.638707881340494 ],
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[ 3.40843828875524, 50.638966444680605 ]
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]
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]
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{
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"file": "",
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"inputVariable": "WDVI",
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"inputlayerName": "wdvi",
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"outputFileName": "vranbs_satellite",
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"plantingDate": "2019-04-18",
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"measurementDate": "2019-06-05",
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"potatoPurposeType": "consumption",
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"targetYield": 45,
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"geometryJson": {
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"type": "Polygon",
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"coordinates": [
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[
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[ 5.66886041703652044, 52.52929999060298627 ],
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[ 5.6716230923214912, 52.52946316399909676 ],
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[ 5.67185376229668581, 52.5280565894154563 ],
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[ 5.66903207841337231, 52.52790646510525363 ],
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[ 5.66886041703652044, 52.52929999060298627 ]
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]
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]
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}
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}
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},
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{
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"file": "Scan_1_20190605.zip",
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"inputVariable": "irmi",
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"outputFileName": "vranbs3",
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"plantingDate": "2019-04-18",
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"measurementDate": "2019-06-20",
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"potatoPurposeType": "starch",
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"targetYield": 45,
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"geometryJson": {
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"type": "Polygon",
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"coordinates": [
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[
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[ 3.40843828875524, 50.638966444680605 ],
|
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[ 3.408953272886064, 50.639197789621612 ],
|
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[ 3.409242951459603, 50.639469958681836 ],
|
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[ 3.409328782148028, 50.639612846807708 ],
|
||||
[ 3.409457528180712, 50.639789755314411 ],
|
||||
[ 3.409639918393741, 50.640014292074966 ],
|
||||
[ 3.409833037442765, 50.640211611372706 ],
|
||||
[ 3.410069071836049, 50.640395321698435 ],
|
||||
[ 3.410380208081761, 50.640572227259661 ],
|
||||
[ 3.410605513638958, 50.640715112034222 ],
|
||||
[ 3.411925160474145, 50.641177783561204 ],
|
||||
[ 3.411935889310142, 50.640728720085136 ],
|
||||
[ 3.412590348309737, 50.63948356709389 ],
|
||||
[ 3.413244807309242, 50.638224772339846 ],
|
||||
[ 3.413400375432099, 50.637901562841307 ],
|
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[ 3.413539850300779, 50.637449065809889 ],
|
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[ 3.413475477284437, 50.637418445552932 ],
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[ 3.40999396998362, 50.637449065810451 ],
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[ 3.409940325803365, 50.638102293212661 ],
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[ 3.409575545377398, 50.638483338338325 ],
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[ 3.409060561246574, 50.638707881340494 ],
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[ 3.40843828875524, 50.638966444680605 ]
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]
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]
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,
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{
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"file": "Scan_1_20190605.json",
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"inputVariable": "irmi",
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"inputlayerName": "IRMI",
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"outputFileName": "vranbs1",
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"plantingDate": "2019-04-18",
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"measurementDate": "2019-06-05",
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"potatoPurposeType": "consumption",
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"targetYield": 45,
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"geometryJson": {
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"type": "Polygon",
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"coordinates": [
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[
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[ 3.40843828875524, 50.638966444680605 ],
|
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[ 3.408953272886064, 50.639197789621612 ],
|
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[ 3.409242951459603, 50.639469958681836 ],
|
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[ 3.409328782148028, 50.639612846807708 ],
|
||||
[ 3.409457528180712, 50.639789755314411 ],
|
||||
[ 3.409639918393741, 50.640014292074966 ],
|
||||
[ 3.409833037442765, 50.640211611372706 ],
|
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[ 3.410069071836049, 50.640395321698435 ],
|
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[ 3.410380208081761, 50.640572227259661 ],
|
||||
[ 3.410605513638958, 50.640715112034222 ],
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[ 3.411925160474145, 50.641177783561204 ],
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[ 3.411935889310142, 50.640728720085136 ],
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[ 3.40999396998362, 50.637449065810451 ],
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[ 3.409940325803365, 50.638102293212661 ],
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[ 3.409575545377398, 50.638483338338325 ],
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[ 3.409060561246574, 50.638707881340494 ],
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[ 3.40843828875524, 50.638966444680605 ]
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]
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||||
]
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||||
}
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||||
}
|
||||
},
|
||||
{
|
||||
"file": "Scan_1_20190605.zip",
|
||||
"inputVariable": "irmi",
|
||||
"outputFileName": "vranbs4",
|
||||
"plantingDate": "2019-04-18",
|
||||
"measurementDate": "2019-07-03",
|
||||
"potatoPurposeType": "starch",
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"targetYield": 45,
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"geometryJson": {
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"type": "Polygon",
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"coordinates": [
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[ 3.411925160474145, 50.641177783561204 ],
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[ 3.411935889310142, 50.640728720085136 ],
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[ 3.412590348309737, 50.63948356709389 ],
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[ 3.413244807309242, 50.638224772339846 ],
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[ 3.413400375432099, 50.637901562841307 ],
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[ 3.413539850300779, 50.637449065809889 ],
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[ 3.413475477284437, 50.637418445552932 ],
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[ 3.40999396998362, 50.637449065810451 ],
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[ 3.409940325803365, 50.638102293212661 ],
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[ 3.409575545377398, 50.638483338338325 ],
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[ 3.409060561246574, 50.638707881340494 ],
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[ 3.40843828875524, 50.638966444680605 ]
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,
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{
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"file": "Scan_1_20190605.zip",
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||||
"inputVariable": "irmi",
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||||
"inputlayerName": "IRMI",
|
||||
"outputFileName": "vranbs2",
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||||
"plantingDate": "2019-04-18",
|
||||
"measurementDate": "2019-06-05",
|
||||
"potatoPurposeType": "starch",
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"targetYield": 45,
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"geometryJson": {
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"type": "Polygon",
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"coordinates": [
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[
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[ 3.411935889310142, 50.640728720085136 ],
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[ 3.413244807309242, 50.638224772339846 ],
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[ 3.413400375432099, 50.637901562841307 ],
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[ 3.413539850300779, 50.637449065809889 ],
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[ 3.413475477284437, 50.637418445552932 ],
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[ 3.40999396998362, 50.637449065810451 ],
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[ 3.409060561246574, 50.638707881340494 ],
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[ 3.40843828875524, 50.638966444680605 ]
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||||
]
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||||
]
|
||||
]
|
||||
}
|
||||
},
|
||||
{
|
||||
"file": "Scan_1_20190605.zip",
|
||||
"inputVariable": "irmi",
|
||||
"inputlayerName": "IRMI",
|
||||
"outputFileName": "vranbs3",
|
||||
"plantingDate": "2019-04-18",
|
||||
"measurementDate": "2019-06-20",
|
||||
"potatoPurposeType": "starch",
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"targetYield": 45,
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"geometryJson": {
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"type": "Polygon",
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"coordinates": [
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[
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[ 3.409328782148028, 50.639612846807708 ],
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[ 3.410069071836049, 50.640395321698435 ],
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[ 3.410380208081761, 50.640572227259661 ],
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[ 3.410605513638958, 50.640715112034222 ],
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||||
[ 3.411925160474145, 50.641177783561204 ],
|
||||
[ 3.411935889310142, 50.640728720085136 ],
|
||||
[ 3.412590348309737, 50.63948356709389 ],
|
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[ 3.413244807309242, 50.638224772339846 ],
|
||||
[ 3.413400375432099, 50.637901562841307 ],
|
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[ 3.413539850300779, 50.637449065809889 ],
|
||||
[ 3.413475477284437, 50.637418445552932 ],
|
||||
[ 3.40999396998362, 50.637449065810451 ],
|
||||
[ 3.409940325803365, 50.638102293212661 ],
|
||||
[ 3.409575545377398, 50.638483338338325 ],
|
||||
[ 3.409060561246574, 50.638707881340494 ],
|
||||
[ 3.40843828875524, 50.638966444680605 ]
|
||||
]
|
||||
]
|
||||
}
|
||||
},
|
||||
{
|
||||
"file": "Scan_1_20190605.zip",
|
||||
"inputVariable": "irmi",
|
||||
"inputlayerName": "IRMI",
|
||||
"outputFileName": "vranbs4",
|
||||
"plantingDate": "2019-04-18",
|
||||
"measurementDate": "2019-07-03",
|
||||
"potatoPurposeType": "starch",
|
||||
"targetYield": 45,
|
||||
"geometryJson": {
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||||
"type": "Polygon",
|
||||
"coordinates": [
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||||
[
|
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[ 3.40843828875524, 50.638966444680605 ],
|
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[ 3.408953272886064, 50.639197789621612 ],
|
||||
[ 3.409242951459603, 50.639469958681836 ],
|
||||
[ 3.409328782148028, 50.639612846807708 ],
|
||||
[ 3.409457528180712, 50.639789755314411 ],
|
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[ 3.409639918393741, 50.640014292074966 ],
|
||||
[ 3.409833037442765, 50.640211611372706 ],
|
||||
[ 3.410069071836049, 50.640395321698435 ],
|
||||
[ 3.410380208081761, 50.640572227259661 ],
|
||||
[ 3.410605513638958, 50.640715112034222 ],
|
||||
[ 3.411925160474145, 50.641177783561204 ],
|
||||
[ 3.411935889310142, 50.640728720085136 ],
|
||||
[ 3.412590348309737, 50.63948356709389 ],
|
||||
[ 3.413244807309242, 50.638224772339846 ],
|
||||
[ 3.413400375432099, 50.637901562841307 ],
|
||||
[ 3.413539850300779, 50.637449065809889 ],
|
||||
[ 3.413475477284437, 50.637418445552932 ],
|
||||
[ 3.40999396998362, 50.637449065810451 ],
|
||||
[ 3.409940325803365, 50.638102293212661 ],
|
||||
[ 3.409575545377398, 50.638483338338325 ],
|
||||
[ 3.409060561246574, 50.638707881340494 ],
|
||||
[ 3.40843828875524, 50.638966444680605 ]
|
||||
]
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||||
]
|
||||
}
|
||||
}
|
||||
}
|
||||
]
|
@ -84,7 +84,7 @@ namespace FarmmapsNbs
|
||||
/// <param name="measurementDate">The date the measurements are taken</param>
|
||||
/// <returns></returns>
|
||||
public async Task<Item> CalculateUptakeMap(Item cropfieldItem, Item inputItem, DateTime plantingDate,
|
||||
DateTime measurementDate, string inputType)
|
||||
DateTime measurementDate, string inputType, string inputLayerName)
|
||||
{
|
||||
var nbsUptakeMapRequest = new TaskRequest {TaskType = VRANBS_TASK};
|
||||
nbsUptakeMapRequest.attributes["operation"] = "uptake";
|
||||
@ -92,7 +92,7 @@ namespace FarmmapsNbs
|
||||
nbsUptakeMapRequest.attributes["plantingDate"] = plantingDate.ToString("o");
|
||||
nbsUptakeMapRequest.attributes["measurementDate"] = measurementDate.ToString("o");
|
||||
nbsUptakeMapRequest.attributes["inputType"] = inputType.ToLower();
|
||||
nbsUptakeMapRequest.attributes["inputLayerName"] = "IRMI"; //toevoeging FS. Kolom IRMI hernoemd als IMI. Deze wordt niet automatisch herkend. En moet dus gespecificeerd worden.
|
||||
nbsUptakeMapRequest.attributes["inputLayerName"] = inputLayerName; //toevoeging FS. Kolom IRMI hernoemd als IMI. Deze wordt niet automatisch herkend. En moet dus gespecificeerd worden.
|
||||
|
||||
//var layers = inputItem.Data["layers"]; //toevoeging FS, check welke data lagen worden omgezet
|
||||
//_logger.LogInformation($"DataLayers: {layers}"); //toevoeging FS check welke data lagen worden omgezet
|
||||
|
Loading…
Reference in New Issue
Block a user