Eerdere aanpassingen NBS en zonering verwerkt

This commit is contained in:
Riepma 2020-12-11 14:02:01 +01:00
parent 2196036135
commit 02708ba01d
7 changed files with 429 additions and 215 deletions

View File

@ -147,6 +147,8 @@ namespace FarmmapsApi.Services
{
_logger.LogInformation($"Trying to get {containsName} data");
var uploadedFilesChildren = await _farmmapsApiService.GetItemChildrenAsync(parentCode, itemType);
Func<Item, bool> func = filter ?? (i => i.Name.ToLower().Contains(containsName.ToLower()));
dataItem = uploadedFilesChildren.FirstOrDefault(func);
if (dataItem != null || tries == maxTries)
@ -268,5 +270,88 @@ namespace FarmmapsApi.Services
return shadowItem;
}
public async Task<string> RunSatelliteTask(Item cropfieldItem)
{
_logger.LogInformation("Gathering satellite information for cropfield, this might take a while!");
var taskmapRequest = new TaskRequest { TaskType = SATELLITE_TASK };
string itemTaskCode = await _farmmapsApiService.QueueTaskAsync(cropfieldItem.Code, taskmapRequest);
await PollTask(TimeSpan.FromSeconds(5), async (tokenSource) =>
{
var itemTaskStatus = await _farmmapsApiService.GetTaskStatusAsync(cropfieldItem.Code, itemTaskCode);
_logger.LogInformation($"Waiting on satellite data; status: {itemTaskStatus.State}");
if (itemTaskStatus.IsFinished)
tokenSource.Cancel();
});
var itemTask = await _farmmapsApiService.GetTaskStatusAsync(cropfieldItem.Code, itemTaskCode);
if (itemTask.State == ItemTaskState.Error)
{
_logger.LogError($"Something went wrong when trying to process satellite data; {itemTask.Message}");
}
return itemTask.Code;
}
public async Task<Item> FindSatelliteItem(Item cropfieldItem, string satelliteTaskCode)
{
var taskStatus = await _farmmapsApiService.GetTaskStatusAsync(cropfieldItem.Code, satelliteTaskCode);
// find ndvi or wdvi satellite data geotiffs
var temporalItem = await FindChildItemAsync(cropfieldItem.Code, TEMPORAL_ITEMTYPE,
"Cropfield Satellite items", item => item.SourceTask == SATELLITE_TASK &&
taskStatus.Finished >= item.Created &&
taskStatus.Finished <= item.Created.Value.AddHours(1));
if (temporalItem == null)
{
_logger.LogError("Temporal item not found");
}
var satelliteTiffs = await _farmmapsApiService.GetItemChildrenAsync(temporalItem.Code);
_logger.LogInformation("Available satellite images:");
var count = 0;
TimeSpan.FromSeconds(0.5);
foreach (var item in satelliteTiffs)
{
Console.WriteLine($"Satellite image #{count}: {item.DataDate}");
count++;
}
_logger.LogInformation("Enter satellite image number for NBS application");
int elment = Int32.Parse(Console.ReadLine());
var selectedSatelliteItem = satelliteTiffs[elment];
if (selectedSatelliteItem == null)
{
_logger.LogError("Satellite item not found");
}
return selectedSatelliteItem;
}
}
}

View File

@ -13,5 +13,8 @@ namespace FarmmapsNbs.Models
public string PotatoPurposeType { get; set; }
public int TargetYield { get; set; }
public JObject GeometryJson { get; set; }
public string InputLayerName { get; set; }
}
}

View File

@ -9,6 +9,7 @@ using FarmmapsApi.Services;
using FarmmapsNbs.Models;
using Microsoft.Extensions.Logging;
using Newtonsoft.Json;
using Newtonsoft.Json.Linq;
using static FarmmapsApiSamples.Constants;
namespace FarmmapsNbs
@ -16,12 +17,15 @@ namespace FarmmapsNbs
public class NbsApplication : IApplication
{
private const string DownloadFolder = "Downloads";
private const string SettingsFile = "settings.json";
private readonly ILogger<NbsApplication> _logger;
private readonly FarmmapsApiService _farmmapsApiService;
private readonly NitrogenService _nitrogenService;
private readonly GeneralService _generalService;
private Settings _settings;
public NbsApplication(ILogger<NbsApplication> logger, FarmmapsApiService farmmapsApiService,
GeneralService generalService, NitrogenService nitrogenService)
{
@ -40,6 +44,10 @@ namespace FarmmapsNbs
if (!Directory.Exists(DownloadFolder))
Directory.CreateDirectory(DownloadFolder);
LoadSettings();
// !! this call is needed the first time an api is called with a fresh clientid and secret !!
await _farmmapsApiService.GetCurrentUserCodeAsync();
var roots = await _farmmapsApiService.GetCurrentUserRootsAsync();
@ -59,6 +67,8 @@ namespace FarmmapsNbs
private async Task Process(List<UserRoot> roots, NitrogenInput input)
{
// !!specify if you are using an already created cropfield:
bool useCreatedCropfield = false;
var plantingDate = input.PlantingDate;
var measurementDate = input.MeasurementDate;
@ -76,12 +86,70 @@ namespace FarmmapsNbs
return;
}
var cropfieldItem = await _generalService.CreateCropfieldItemAsync(myDriveRoot.Code,
// Use already created cropfield or create new one
Item cropfieldItem;
if (useCreatedCropfield == false || string.IsNullOrEmpty(_settings.CropfieldItemCode))
{
_logger.LogInformation("Creating cropfield");
cropfieldItem = await _generalService.CreateCropfieldItemAsync(myDriveRoot.Code,
$"VRA NBS cropfield {input.OutputFileName}", plantingDate.Year, input.GeometryJson.ToString(Formatting.None));
_settings.CropfieldItemCode = cropfieldItem.Code;
SaveSettings();
}
else
{
_logger.LogInformation("Cropfield already exists, trying to get it");
cropfieldItem = await _farmmapsApiService.GetItemAsync(_settings.CropfieldItemCode);
}
var geotiffItem = (Item)null;
if (input.File.Contains(".tif") || input.File.Contains(".geotiff")) {
// No file input, use most recent satellite image
if (string.IsNullOrEmpty(input.File))
{
_logger.LogInformation("No specific data given, retrieving most recent satellite image");
// check if satellite task not yet done, do here and save taskcode
if (useCreatedCropfield == false || string.IsNullOrEmpty(_settings.SatelliteTaskCode))
{
var satelliteTaskCode = await _generalService.RunSatelliteTask(cropfieldItem);
_settings.SatelliteTaskCode = satelliteTaskCode;
SaveSettings();
}
// Select a particular satellite item from satelliteTask
Item satalliteItem = await _generalService.FindSatelliteItem(cropfieldItem, _settings.SatelliteTaskCode);
// must be wdvi[1]
var inputType = (satalliteItem.Data["layers"] as JArray)?[1]["name"].ToString();
if (string.IsNullOrEmpty(inputType))
{
_logger.LogError("Could not get the input type name from the satellite item");
return;
}
// download the geotiff
_logger.LogInformation("Downloading geotiff file");
await _farmmapsApiService.DownloadItemAsync(satalliteItem.Code,
Path.Combine(DownloadFolder, $"nbs_inputSatelliteGeotiff_{input.OutputFileName}.zip"));
// overwrite measurement date by date of satellite item
measurementDate = satalliteItem.DataDate.Value;
geotiffItem = satalliteItem;
}
// (geo)tiff input:
else if (input.File.Contains(".tif") || input.File.Contains(".geotiff")) {
_logger.LogInformation("input = tiff data");
var dataPath = Path.Combine("Data", input.File);
geotiffItem = await _generalService.UploadDataAsync(uploadedRoot, GEOTIFF_PROCESSED_ITEMTYPE, dataPath,
@ -93,6 +161,7 @@ namespace FarmmapsNbs
}
}
// json/shape input
else {
var isGeoJson = input.File.Contains("json");
var dataPath = Path.Combine("Data", input.File);
@ -117,6 +186,12 @@ namespace FarmmapsNbs
Path.Combine(DownloadFolder, $"{input.OutputFileName}.input_geotiff.zip"));
}
_logger.LogInformation($"Calculating targetN with targetYield: {input.TargetYield}");
var targetNItem = await _nitrogenService.CreateTargetNItem(cropfieldItem);
var targetNData = await _nitrogenService.CalculateTargetN(cropfieldItem, targetNItem, plantingDate,
@ -139,7 +214,7 @@ namespace FarmmapsNbs
_logger.LogInformation("Calculating uptake map");
var uptakeMapItem =
await _nitrogenService.CalculateUptakeMap(cropfieldItem, geotiffItem, plantingDate,
measurementDate, input.InputVariable);
measurementDate, input.InputVariable, input.InputLayerName);
if (uptakeMapItem == null)
{
_logger.LogError("Something went wrong with creating the uptakeMap");
@ -154,8 +229,7 @@ namespace FarmmapsNbs
_logger.LogInformation("Calculating application map");
var applicationMapItem =
await _nitrogenService.CalculateApplicationMap(cropfieldItem, geotiffItem, plantingDate,
measurementDate,
input.InputVariable, targetNData.TargetN);
measurementDate, input.InputVariable, targetNData.TargetN, input.InputLayerName);
if (applicationMapItem == null)
{
@ -189,5 +263,28 @@ namespace FarmmapsNbs
}
// Functions to save previously created cropfields
private void LoadSettings()
{
if (File.Exists(SettingsFile))
{
var jsonText = File.ReadAllText(SettingsFile);
_settings = JsonConvert.DeserializeObject<Settings>(jsonText);
}
else
{
_settings = new Settings();
}
}
private void SaveSettings()
{
if (_settings == null)
return;
var json = JsonConvert.SerializeObject(_settings);
File.WriteAllText(SettingsFile, json);
}
}
}

View File

@ -1,126 +1,195 @@
[
{
"file": "Scan_1_20190605.json",
"inputVariable": "irmi",
"outputFileName": "vranbs1",
"plantingDate": "2019-04-18",
"measurementDate": "2019-06-05",
"file": "", // keep emptpy to use satellite image
"inputVariable": "wdvi",
"InputLayerName": "wdvi",
"outputFileName": "rtest1",
"plantingDate": "2020-05-01",
"measurementDate": "2020-06-14",
"potatoPurposeType": "consumption",
"targetYield": 45,
"geometryJson": { "type": "Polygon", "coordinates": [ [ [ 3.40843828875524, 50.638966444680605 ], [ 3.408953272886064, 50.639197789621612 ], [ 3.409242951459603, 50.639469958681836 ], [ 3.409328782148028, 50.639612846807708 ], [ 3.409457528180712, 50.639789755314411 ], [ 3.409639918393741, 50.640014292074966 ], [ 3.409833037442765, 50.640211611372706 ], [ 3.410069071836049, 50.640395321698435 ], [ 3.410380208081761, 50.640572227259661 ], [ 3.410605513638958, 50.640715112034222 ], [ 3.411925160474145, 50.641177783561204 ], [ 3.411935889310142, 50.640728720085136 ], [ 3.412590348309737, 50.63948356709389 ], [ 3.413244807309242, 50.638224772339846 ], [ 3.413400375432099, 50.637901562841307 ], [ 3.413539850300779, 50.637449065809889 ], [ 3.413475477284437, 50.637418445552932 ], [ 3.40999396998362, 50.637449065810451 ], [ 3.409940325803365, 50.638102293212661 ], [ 3.409575545377398, 50.638483338338325 ], [ 3.409060561246574, 50.638707881340494 ], [ 3.40843828875524, 50.638966444680605 ] ] ] }
},
{
"file": "Scan_1_20190605.zip",
"inputVariable": "irmi",
"outputFileName": "vranbs2",
"plantingDate": "2019-04-18",
"measurementDate": "2019-06-05",
"potatoPurposeType": "starch",
"targetYield": 45,
"targetYield": 60,
"geometryJson": {
"type": "Polygon",
"coordinates": [
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}
},
{
"file": "Scan_1_20190605.zip",
"inputVariable": "irmi",
"outputFileName": "vranbs3",
"plantingDate": "2019-04-18",
"measurementDate": "2019-06-20",
"potatoPurposeType": "starch",
"targetYield": 45,
"geometryJson": {
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"coordinates": [
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"inputVariable": "irmi",
"outputFileName": "vranbs4",
"plantingDate": "2019-04-18",
"measurementDate": "2019-07-03",
"potatoPurposeType": "starch",
"targetYield": 45,
"geometryJson": {
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}
//,
//{
// "file": "", // keep emptpy to use satellite image
// "inputVariable": "wdvi",
// "InputLayerName": "wdvi",
// "outputFileName": "mtest1",
// "plantingDate": "2020-04-01",
// "measurementDate": "2020-06-24",
// "potatoPurposeType": "consumption",
// "targetYield": 60,
// "geometryJson": {
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// "outputFileName": "vranbs3",
// "plantingDate": "2019-04-18",
// "measurementDate": "2019-06-20",
// "potatoPurposeType": "starch",
// "targetYield": 45,
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// "inputVariable": "irmi",
// "InputLayerName": "",
// "outputFileName": "vranbs4",
// "plantingDate": "2019-04-18",
// "measurementDate": "2019-07-03",
// "potatoPurposeType": "starch",
// "targetYield": 45,
// "geometryJson": {
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// "coordinates": [
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// [ 3.410380208081761, 50.640572227259661 ],
// [ 3.410605513638958, 50.640715112034222 ],
// [ 3.411925160474145, 50.641177783561204 ],
// [ 3.411935889310142, 50.640728720085136 ],
// [ 3.412590348309737, 50.63948356709389 ],
// [ 3.413244807309242, 50.638224772339846 ],
// [ 3.413400375432099, 50.637901562841307 ],
// [ 3.413539850300779, 50.637449065809889 ],
// [ 3.413475477284437, 50.637418445552932 ],
// [ 3.40999396998362, 50.637449065810451 ],
// [ 3.409940325803365, 50.638102293212661 ],
// [ 3.409575545377398, 50.638483338338325 ],
// [ 3.409060561246574, 50.638707881340494 ],
// [ 3.40843828875524, 50.638966444680605 ]
// ]
// ]
// }
//}
]

View File

@ -82,9 +82,11 @@ namespace FarmmapsNbs
/// <param name="inputItem"></param>
/// <param name="plantingDate">The date the crop is planted</param>
/// <param name="measurementDate">The date the measurements are taken</param>
/// <param name="inputType">Data type, could be yara, ci, irmi or wdvi</param>
/// <param name="inputLayerName">Column name in which the sensor value is stored</param>
/// <returns></returns>
public async Task<Item> CalculateUptakeMap(Item cropfieldItem, Item inputItem, DateTime plantingDate,
DateTime measurementDate, string inputType)
DateTime measurementDate, string inputType, string inputLayerName)
{
var nbsUptakeMapRequest = new TaskRequest {TaskType = VRANBS_TASK};
nbsUptakeMapRequest.attributes["operation"] = "uptake";
@ -92,10 +94,9 @@ namespace FarmmapsNbs
nbsUptakeMapRequest.attributes["plantingDate"] = plantingDate.ToString("o");
nbsUptakeMapRequest.attributes["measurementDate"] = measurementDate.ToString("o");
nbsUptakeMapRequest.attributes["inputType"] = inputType.ToLower();
nbsUptakeMapRequest.attributes["inputLayerName"] = "IRMI"; //toevoeging FS. Kolom IRMI hernoemd als IMI. Deze wordt niet automatisch herkend. En moet dus gespecificeerd worden.
if (!(string.IsNullOrEmpty(inputLayerName))) nbsUptakeMapRequest.attributes["inputLayerName"] = inputLayerName;
//toevoeging FS. Kolom IRMI hernoemd als IMI. Deze wordt niet automatisch herkend. En moet dus gespecificeerd worden.
//var layers = inputItem.Data["layers"]; //toevoeging FS, check welke data lagen worden omgezet
//_logger.LogInformation($"DataLayers: {layers}"); //toevoeging FS check welke data lagen worden omgezet
string itemTaskCode = await _farmmapsApiService.QueueTaskAsync(cropfieldItem.Code, nbsUptakeMapRequest);
@ -119,6 +120,7 @@ namespace FarmmapsNbs
GEOTIFF_PROCESSED_ITEMTYPE, itemName,
i => i.Updated >= itemTask.Finished.GetValueOrDefault(DateTime.UtcNow) &&
i.Name.ToLower().Contains(itemName.ToLower()));
if (uptakeMapItem == null)
{
_logger.LogError("Could not find the uptake geotiff child item under cropfield");
@ -136,11 +138,11 @@ namespace FarmmapsNbs
/// <param name="inputItem">The farmmaps item containing the geotiff data</param>
/// <param name="plantingDate">The date the crop is planted</param>
/// <param name="measurementDate">The date the measurements are taken</param>
/// <param name="inputType">The inputtype to use</param>
/// <param name="inputType">The inputtype to use, could be yara, ci, irmi or wdvi</param>
/// <param name="targetN">The target nitrogen to use for the calculations</param>
/// <returns></returns>
public async Task<Item> CalculateApplicationMap(Item cropfieldItem, Item inputItem, DateTime plantingDate,
DateTime measurementDate, string inputType, double targetN)
DateTime measurementDate, string inputType, double targetN, string inputLayerName)
{
var nbsApplicationMapRequest = new TaskRequest {TaskType = VRANBS_TASK};
nbsApplicationMapRequest.attributes["operation"] = "application";
@ -150,6 +152,7 @@ namespace FarmmapsNbs
nbsApplicationMapRequest.attributes["inputCode"] = inputItem.Code;
nbsApplicationMapRequest.attributes["inputType"] = inputType.ToLower();
nbsApplicationMapRequest.attributes["targetN"] = targetN.ToString(CultureInfo.InvariantCulture);
if (!(string.IsNullOrEmpty(inputLayerName))) nbsApplicationMapRequest.attributes["inputLayerName"] = inputLayerName;
string itemTaskCode = await _farmmapsApiService.QueueTaskAsync(cropfieldItem.Code, nbsApplicationMapRequest);

View File

@ -1,4 +1,4 @@
namespace FarmmapsHaulmkilling.Models
namespace FarmmapsZonering.Models
{
public class InputParameter
{

View File

@ -1,3 +1,4 @@
using System;
using System.Collections.Generic;
using System.IO;
using System.Linq;
@ -40,17 +41,33 @@ namespace FarmmapsZonering
if (!Directory.Exists(DownloadFolder))
Directory.CreateDirectory(DownloadFolder);
// Load settings from previous cropfield
LoadSettings();
// Read input data from separate file
var zoneringInputJson = File.ReadAllText("ZoneringInput.json");
List<ZoneringInput> zoneringInputs = JsonConvert.DeserializeObject<List<ZoneringInput>>(zoneringInputJson);
// !! this call is needed the first time an api is called with a fresh clientid and secret !!
await _farmmapsApiService.GetCurrentUserCodeAsync();
var roots = await _farmmapsApiService.GetCurrentUserRootsAsync();
// await SimpleAdditionAsync(roots);
await ZoningAsync(roots);
foreach (var input in zoneringInputs)
{
try
{
await ZoningAsync(roots, input);
}
catch (Exception ex)
{
_logger.LogError(ex.Message);
}
}
private async Task SimpleAdditionAsync(List<UserRoot> roots)
}
private async Task ZoningAsync(List<UserRoot> roots, ZoneringInput input)
{
var myDrive = roots.SingleOrDefault(r => r.Name == "My drive");
if (myDrive == null)
@ -70,72 +87,12 @@ namespace FarmmapsZonering
if (string.IsNullOrEmpty(_settings.CropfieldItemCode))
{
_logger.LogInformation("Creating cropfield");
cropfieldItem = await _generalService.CreateCropfieldItemAsync(myDrive.Code, "Cropfield VRA Zonering", 2020,
@"{ ""type"": ""Polygon"", ""coordinates"": [ [ [ 5.670991253771027, 52.796788997702613 ], [ 5.671526456638633, 52.797291618546666 ], [ 5.671275936147413, 52.797422436717852 ], [ 5.671959173850738, 52.798269302728798 ], [ 5.670649634919365, 52.798778791408822 ], [ 5.671503682048522, 52.799591206957416 ], [ 5.675159003761311, 52.798193567415474 ], [ 5.673029579585948, 52.796024727480535 ], [ 5.670991253771027, 52.796788997702613 ] ] ] }");
_settings.CropfieldItemCode = cropfieldItem.Code;
SaveSettings();
}
else
{
_logger.LogInformation("Cropfield already exists trying to get");
cropfieldItem = await _farmmapsApiService.GetItemAsync(_settings.CropfieldItemCode);
}
var inputOneItem = await _generalService.UploadDataAsync(uploadedRoot, GEOTIFF_PROCESSED_ITEMTYPE,
Path.Combine("Data", "data_9001.tif"),"data_9001");
if (inputOneItem == null) {
_logger.LogError("Could not find item for uploaded data");
return;
}
//var cropfieldItem = await _generalService.CreateCropfieldItemAsync(myDrive.Code, input.CropFieldName, input.cropYear
//$"VRA Poten cropfield {input.OutputFileName}",
//input.GeometryJson.ToString(Formatting.None));
var inputTwoItem = await _generalService.UploadDataAsync(uploadedRoot, GEOTIFF_PROCESSED_ITEMTYPE,
Path.Combine("Data", "data_times_two_4326.tiff"), "data_times_two_4326");
if (inputTwoItem == null) {
_logger.LogError("Could not find item for uploaded data");
return;
}
var outputItem = await _zoneringService.CreateApplicationMapAsync(cropfieldItem, "[0] + [1]", new Output()
{
Name = "add",
Unit = "n/kg",
Quantity = "Nitrogen"
}, new InputParameter()
{
ItemCode = inputOneItem.Code,
LayerName = inputOneItem.Data["layers"][0]["name"].ToString()
},
new InputParameter()
{
ItemCode = inputTwoItem.Code,
LayerName = inputTwoItem.Data["layers"][0]["name"].ToString()
});
_logger.LogInformation("Downloading output");
await _farmmapsApiService.DownloadItemAsync(outputItem.Code,
Path.Combine(DownloadFolder, $"times_2_zonering.zip"));
}
private async Task ZoningAsync(List<UserRoot> roots)
{
var myDrive = roots.SingleOrDefault(r => r.Name == "My drive");
if (myDrive == null)
{
_logger.LogError("Could not find a needed root item");
return;
}
var uploadedRoot = roots.SingleOrDefault(r => r.Name == "Uploaded");
if (uploadedRoot == null)
{
_logger.LogError("Could not find a needed root item");
return;
}
Item cropfieldItem;
if (string.IsNullOrEmpty(_settings.CropfieldItemCode))
{
_logger.LogInformation("Creating cropfield");
cropfieldItem = await _generalService.CreateCropfieldItemAsync(myDrive.Code, "Cropfield VRA Zonering", 2020,
@"{ ""type"": ""Polygon"", ""coordinates"": [ [ [ 5.670991253771027, 52.796788997702613 ], [ 5.671526456638633, 52.797291618546666 ], [ 5.671275936147413, 52.797422436717852 ], [ 5.671959173850738, 52.798269302728798 ], [ 5.670649634919365, 52.798778791408822 ], [ 5.671503682048522, 52.799591206957416 ], [ 5.675159003761311, 52.798193567415474 ], [ 5.673029579585948, 52.796024727480535 ], [ 5.670991253771027, 52.796788997702613 ] ] ] }");
_settings.CropfieldItemCode = cropfieldItem.Code;