fix url

Integrating-FarmMaps-OIDC.md

@@ -1,7 +1,7 @@
 # Integrating FarmMaps OpenID Connect
 Farmmaps uses OpenID Connect (OIDC).  
 This page lists the information needed to integrate OpenID connect into your application.  
-Note that for testing purposes it is quicker to just [generate an access token]() instead of implementing a complete integration. 
+Note that for testing purposes it is quicker to just [generate an access token](.md) instead of implementing a complete integration. 
 Please see [https://openid.net/connect/](https://openid.net/connect/) if you are not familiar with OpenID Connect.
 
 To integrate OIDC, it is recommended to use a (certified) library/implementation for your language of choice:  
@@ -21,7 +21,7 @@ More about flow types can be found [here](https://www.scottbrady91.com/OpenID-Co
 
 * At the moment, FarmMaps does not support dynamic client registration.   
 Please request a client id from one of our developers when you need one for your application.  
-In the meantime, it is recommended to simply [generate an access token]() to explore the REST API. 
+In the meantime, it is recommended to simply [generate an access token](.md) to explore the REST API. 
 
 
 

Main-components.md

@@ -73,14 +73,14 @@ There's also swagger based reference of the [REST API](https://farmmaps.awacc.nl
 #### MQTT Endpoint
 The MQTT Endpoint provides a way to input more stream like data like a live GPS location, or live temperature measurement to FarmMaps.
 This endpoint is still under development. If you would like to build on top of this endpoint, please contact the FarmMaps development team.
-As a reference, please also see [Sending data to MQTT](Message-Queue-Endpoint).
+As a reference, please also see [Sending data to MQTT](Message-Queue-Endpoint.md).
 
 ### Data processing infrastructure
 To process the data that is provided through the endpoints, FarmMaps uses queues and workers to manage the execution of these tasks.
-How this works is described in [the workflow article](Workflow)
+How this works is described in [the workflow article](Workflow.md)
 
 ### Viewer
 To visualize all data in the FarmMaps backend, FarmMaps integrates it's own viewer.
 This viewer is available as an open source project and can be found in the [FarmMapsLibs Repository](https://git.akkerweb.nl/FarmMaps/FarmMapsLib).
-There's also a separate documentation page which can be found [here](FarmMapsLibs). [under development]
+There's also a separate documentation page which can be found [here](FarmMapsLibs.md). [under development]
 

Message-Queue-Endpoint.md

@@ -4,7 +4,7 @@ The same workflow can be followed for different languages, as long as there's a
 FarmMaps provides an MQTT endpoint to allow your application to send signals to FarmMaps, and listen for events.  
 These signals are collected in a "message queue".  
 
-If you are not familiar with anything mentioned, please see the [FAQ](#faq) at the end. 
+If you are not familiar with anything mentioned, please see the [FAQ](#faq.md) at the end. 
 
 ### Prerequisites
 To follow along with the examples, you need:
@@ -162,7 +162,7 @@ For now, we'll stick with the pregenerated protobuf class.
 * [Protobuf documentation](https://developers.google.com/protocol-buffers/docs/overview)  
 * [Paho MQTT documentation](https://www.eclipse.org/paho/clients/python/docs/)
 
-## [FAQ](#faq) 
+## [FAQ](#faq.md) 
 #### How do I install the required Python modules?
 This tutorial requires the `paho-mqtt` and `protobuf` modules.
 These can be installed with the following commands:  

README.md

@@ -5,7 +5,7 @@ This page provides an index of the available documentation for the FarmMaps plat
 ## Getting started
 The main starting point for Farmmaps API access is the REST API.
 To get started, follow the steps below.   
-The workflow and high-level architecture FarmMaps are documented on the [Farmmaps Workflow](Workflow) and [FarmMaps Main Components](Main-components) pages.
+The workflow and high-level architecture FarmMaps are documented on the [Farmmaps Workflow](Workflow) and [FarmMaps Main Components](Main-components.md) pages.
 
 ### Environments
 
@@ -47,8 +47,8 @@ For each request, the access token needs to be sent along. This access token pro
 
 To continue please see one of the articles below:
 
-- [Integrating FarmMaps Open ID Connect into your application](Integrating-FarmMaps-OIDC)
+- [Integrating FarmMaps Open ID Connect into your application](Integrating-FarmMaps-OIDC.md)
-- [Creating an access token for testing.](Create-access-token)
+- [Creating an access token for testing.](Create-access-token.md)
 
 ## Using the FarmMaps API
 Once you have an access token, you can start querying the API.  
@@ -57,17 +57,17 @@ The API basics are uploading files, creating items and and running tasks to modi
 For testing purposes, [Postman](https://www.postman.com) can be used to perform HTTP requests more easily.
 
 We provide the following guides:
-* [Uploading a file](Upload-a-file)
+* [Uploading a file](Upload-a-file.md)
-* [Creating a cropfield](Create-a-cropfield)
+* [Creating a cropfield](Create-a-cropfield.md)
-* [Running a task](Running-tasks)
+* [Running a task](Running-tasks.md)
 
 Generally, tasks can be run in the same way.
 However, each specific task has it's own inputs and properties. 
 How these work can be found in the use task examples below.
  
 ### <a name="task-examples"></a>Task examples
-* [VRAPoten-API](VRAPoten-API)
+* [VRAPoten-API](VRAPoten-API.md)
-* [VRANbs-API](VRANbs-API)
+* [VRANbs-API](VRANbs-API.md)
-* [VRAHerbicide-API](VRAHerbicide-API)
+* [VRAHerbicide-API](VRAHerbicide-API.md)
 
 

Running-tasks.md

@@ -259,7 +259,7 @@ Vary: Accept-Encoding
 
 ## What's next?
 Now that you know how to run a task, you can start running specialized tasks to create or process your own data.  
-Head over to the [Task Examples](Home#task-examples)
+Head over to the [Task Examples](Home#task-examples.md)
 
 
 

Upload-a-file.md

@@ -9,7 +9,7 @@ The workflow for uploading a file is as follows:
 * Downloading the file to check (optional)
 
 **Prerequisites**
-- To be able to perform requests, make sure you have an [access token](Create-access-token).
+- To be able to perform requests, make sure you have an [access token](Create-access-token.md).
 
 ### Registering the upload
 Before a file can be uploaded it needs to be registered. Files smaller than 2 MB can be uploaded in one chunk. 

VRAHerbicide-API.md

@@ -1,5 +1,5 @@
 ## VRAHerbicide API
-[<< Home](Home)  
+[<< Home](Home.md)  
 
 FarmMaps is an asynchronous architecture, the API flow keeps this in mind.
 The API expects that all data is already processed and available provided, for example through the normal FarmMaps flow (frontend).
@@ -12,7 +12,7 @@ For the currently available public FarmMaps API you can take a look at swagger:
 
 **Users can poll the task api to see if a task is completed**  
 **This can be achieved with the task execution id obtained from calling the 'ItemTask' API.**  
-[Poll task status](Polling-task-status)  
+[Poll task status](Polling-task-status.md)  
 
 **Users can query the API for child items of a cropfield to see what items it has.**
 
@@ -30,11 +30,11 @@ For the currently available public FarmMaps API you can take a look at swagger:
 * Download item data (tiff of shape)
 
 ### Steps
-[Authentication](Authentication)  
+[Authentication](Authentication.md)  
 
 ##### Optional
-[Create Cropfield](Create-Cropfield)  
+[Create Cropfield](Create-Cropfield.md)  
-[Upload Data](Upload-Data)  
+[Upload Data](Upload-Data.md)  
 
 ###### Transform shape to geotiff
 The VRAHerbicide task only processes tiff items as input.  
@@ -163,7 +163,7 @@ Response 403 No WRITE permissions in item
 Response 404 Item not found  
 
 ##### Create taskmap
-[Create Taskmap](Create-Taskmap)
+[Create Taskmap](Create-Taskmap.md)
 
 ##### Download the data
 In case the data is available it can be downloaded with the File API.

VRANbs-API.md

@@ -1,5 +1,5 @@
 ## VRANbs API v0.2
-[<< Home](Home)  
+[<< Home](Home.md)  
 
 FarmMaps is an asynchronous architecture, the API flow keeps this in mind.
 The API expects that all data is already processed and available provided, for example through the normal FarmMaps flow (frontend).
@@ -17,7 +17,7 @@ For the currently available public FarmMaps API you can take a look at swagger:
 
 **Users can poll the task api to see if a task is completed**  
 **This can be achieved with the task execution id obtained from calling the 'ItemTask' API.**  
-[Poll task status](Polling-task-status)  
+[Poll task status](Polling-task-status.md)  
 
 **Users can query the API for child items of a cropfield to see what items it has.**
 
@@ -38,11 +38,11 @@ For the currently available public FarmMaps API you can take a look at swagger:
 * Download item data (tiff of shape)
 
 ### Steps
-[Authentication](Authentication)  
+[Authentication](Authentication.md)  
 
 ##### Optional
-[Create Cropfield](Create-Cropfield)  
+[Create Cropfield](Create-Cropfield.md)  
-[Upload Data](Upload-Data)  
+[Upload Data](Upload-Data.md)  
 
 ###### Transform shape to geotiff
 The VRANbs task only processes tiff items as input.  
@@ -286,7 +286,7 @@ Response 403 No WRITE permissions in item
 Response 404 Item not found  
 
 ##### Create taskmap
-[Create Taskmap](Create-Taskmap)
+[Create Taskmap](Create-Taskmap.md)
 
 ##### Download the data
 In case the data is available it can be downloaded with the File API.

VRAPoten-API.md

@@ -1,5 +1,5 @@
 ## VRAPoten API v0.1.1
-[<< Home](Home)  
+[<< Home](Home.md)  
 
 FarmMaps is an asynchronous architecture, the API flow keeps this in mind.
 The API expects that all data is already processed and available provided, for example through the normal FarmMaps flow.
@@ -14,7 +14,7 @@ For the currently available public FarmMaps API you can take a look at swagger:
 
 **Users can poll the task api to see if a task is completed**  
 **This can be achieved with the task execution id obtained from calling the 'ItemTask' API.**  
-[Poll task status](Polling-task-status)  
+[Poll task status](Polling-task-status.md)  
 
 ### API flow
 * Authenticate User
@@ -30,13 +30,13 @@ For the currently available public FarmMaps API you can take a look at swagger:
 
 ### Steps
 ###### Authentication 
-[Authentication](Authentication)
+[Authentication](Authentication.md)
 
 ###### Create cropfield with FarmMaps API (optional)
-[Create Cropfield](Create-Cropfield)
+[Create Cropfield](Create-Cropfield.md)
 
 ###### Uploading own data (optional)
-[Upload Data](Upload-Data)
+[Upload Data](Upload-Data.md)
 
 ###### Creating appliance maps
 Execute the VRAPotenTask with the item code of the cropfield as parameter inside {code}.  
@@ -75,7 +75,7 @@ Response 403 No WRITE permissions in item
 Response 404 Item not found  
 
 ###### Create taskmap
-[Create Taskmap](Create-Taskmap)
+[Create Taskmap](Create-Taskmap.md)
 
 ###### Download the data
 In case the data is available it can be downloaded with the File API.